Servicenavigation

Publikationen

2009

• Evgenia Freis, Silvia Selinski, Birte Weibert, Ulrike Krahn, Marcus Schmidt, Mathias Gehrmann, Matthias Hermes, Lindsey Maccoux, Jonathan West, Holger Schwender, Jörg Rahnenführer, Jan G. Hengstler, Katja Ickstadt
  Effects of metagene calculation on survival: An integrative approach using cluster and promoter analysis
  Proceedings of the Sixth International Workshop on Computational Systems Biology (WCSB 2009), p. 47-50, Aarhus, June 10-12, 2009
  (Free Conference Proceedings)
• Marco Grzegorczyk, Dirk Husmeier
  Modelling non-stationary gene regulatory processes with a non-homogeneous dynamic Bayesian network and the change point process
  Proceedings of the Sixth International Workshop on Computational Systems Biology (WCSB 2009), p. 51-54, Aarhus, June 10-12, 2009
  (Free Conference Proceedings)
• Martin L. Sos, Kathrin Michel, Thomas Zander, Jonathan Weiss, Peter Frommolt, Martin Peifer, Danan Li, Roland Ullrich, Mirjam Koker, Florian Fischer, Takeshi Shimamura, Daniel Rauh, Craig Mermel, Stefanie Fischer, Isabel Stückrath, Stefanie Heynck, Rameen Beroukhim, William Lin, Wendy Winckler,  Kinjal Shah, Thomas LaFramboise, Whei F. Moriarty, Megan Hanna, Laura Tolosi, Jörg Rahnenführer, Roel Verhaak, Derek Chiang, Gad Getz, Martin Hellmich, Jürgen Wolf, Luc Girard, Michael Peyton, Barbara A. Weir, Tzu-Hsiu Chen, Heidi Greulich, Jordi Barretina, Geoffrey I. Shapiro, Levi A. Garraway, Adi F. Gazdar, John D. Minna, Matthew Meyerson, Kwok-Kin Wong, Roman K. Thomas
  Predicting drug susceptibility of non–small cell lung cancers based on genetic lesions
  Journal of Clinical Investigation, 119(6): 1727-1740, 2009
  (Full free text on journal homepage)
  
• Silke Wemmert, Marc Bettscheider, Simone Alt, Ralf Ketter, Kai Kammers, Wolfgang Feiden, Wolf-Ingo Steudel, Jörg Rahnenführer, Steffi Urbschat
  p15 promotor methylation - A novel prognostic marker in glioblastoma patients
  International Journal of Oncology 34(6):1743-1748, 2009
  (Abstract on journal homepage)
  
• Katharina Podwojski, Arno Fritsch, Daniel C. Chamrad, Wolfgang Paul, Barbara Sitek, Kai Stühler, Petra Mutzel, Christian Stephan, Helmut E. Meyer, Wolfgang Urfer, Katja Ickstadt, Jörg Rahnenführer 
  Retention Time Alignment Algorithms for LC/MS Data must consider Nonlinear Shifts
  Bioinformatics 25(6):758-764, 2009
  (Abstract at journal homepage, Link to supplementary material)
• Ruth-Jessica Karlowatz, Jürgen Scharhag, Jörg Rahnenführer, Ulrich Schneider, Ernst Jakob, Wilfried Kindermann, Klaus Dieter Zang
  Polymorphisms in the IGF1 signalling pathway including the myostatin gene are associated with left ventricular mass in male athletes
  British Journal of Sports Medicine, Jan 9. [Epub ahead of print], 2009
  (Abstract at journal homepage)
  
  

2008

• Holger Schwender, Katja Ickstadt, Jörg Rahnenführer
  Classification with High-Dimensional Genetic Data: Assigning Patients and Genetic Features to Known Classes
  Biometrical Journal 50(6): 911-926, 2008
  (Abstract at journal homepage)
• Jörg Rahnenführer
  Locally optimal tests of independence for Archimedean copula families
  In: B.Schipp, W. Krämer (Eds.): Festschrift in Honour of Götz Trenkler: Statistical Inference, Econometric Analysis and Matrix Algebra, 103-112, 2008
• Jasmina Bogojeska, Adrian Alexa, André Altmann, Thomas Lengauer, Jörg Rahnenführer
  Rtreemix: an R package for estimating evolutionary pathways and genetic progression scores
  Bioinformatics 24(20): 2391-2392, 2008
  (Full free text on journal homepage)
• Katharina Podwojski, Arno Fritsch, Daniel Chamrad, Wolfgang Paul, Petra Mutzel, Katja Ickstadt, Jörg Rahnenführer
  A retention-time alignment algorithm for LC/MS data
  Proceedings of the Fifth International Workshop on Computational Systems Biology (WCSB 2008), p. 129-132, Leipzig, June 11-13, 2008
  (Free Conference Proceedings)
• Jasmina Bogojeska, Thomas Lengauer, Jörg Rahnenführer
  Stability Analysis of Mixtures of Mutagenetic Trees
  BMC Bioinformatics 9: 165, 2008
  (Full free text on BioMed Central)
• Max Hornstein, Michele J. Hoffmann, Adrian Alexa, Masanori Yamanaka, Mirko Müller, Volker Jung, Jörg Rahnenführer, Wolfgang A. Schulz
  Protein phosphatase and TRAIL receptor genes as new candidate tumor genes on chromosome 8p in prostate cancer
  Cancer Genomics Proteomics 5(2): 123-136, 2008
• Ralf Ketter, Jörg Rahnenführer, Wolfram Henn, Yoo-Jin Kim, Wolfgang Feiden, Wolf-Ingo Steudel, Klaus D. Zang, Steffi Urbschat
  Correspondence of tumor localization with tumor recurrence and cytogenetic progression in meningiomas
  Neurosurgery 62(1): 61-70, 2008
  (Abstract at journal homepage)

                                                                                                                

2007

• Francisco S. Domingues, Jörg Rahnenführer, Thomas Lengauer
  Conformational analysis of alternative protein structures
  Bioinformatics 23(23): 3131-3138, 2007
  (Abstract at journal homepage)
• Jörn Kamradt, Volker Jung, Kerstin Wahrheit, Laura Tolosi, Jörg Rahnenführer, Martin Schilling, Robert Walker, Sean Davis, Michael Stöckle, Paul Meltzer, Bernd Wullich
  Detection of Novel Amplicons in Prostate Cancer by Comprehensive Genomic Profiling of Prostate Cancer Cell Lines Using Oligonucleotide-Based ArrayCGH
  PLoS ONE 2(8): e769, 2007
  (Full free text on journal homepage)
• Ralf Ketter, Steffi Urbschat, Wolfram Henn, Wolfgang Feiden, Niko Beerenwinkel, Thomas Lengauer, Wolf-Ingo Steudel, Klaus D. Zang, Jörg Rahnenführer
  Application of oncogenetic trees mixtures as a biostatistical model of the clonal cytogenetic evolution of meningiomas
  International Journal of Cancer 121(7): 1473-1480, 2007
  (Abstract at journal homepage)
• Andreas Schlicker, Jörg Rahnenführer, Mario Albrecht, Thomas Lengauer T, Francisco S. Domingues
  GOTax: investigating biological processes and biochemical activities along the taxonomic tree
  Genome Biology 8(3): R33, 2007
  (Full tree text on journal homepage)
• Wolfgang A. Schulz, Adrian Alexa, Volker Jung, Christiane Hader, Michele J. Hoffmann, Masanori Yamanaka, Sandy Fritzsche, Agnes Wlazlinski, Mirko Müller, Thomas Lengauer, Rainer Engers, Andrea R. Florl, Bernd Wullich, Jörg Rahnenführer
  Factor interaction analysis for chromosome 8 and DNA methylation alterations highlights innate immune response suppression and cytoskeletal changes in prostate cancer
  Molecular Cancer 6: 14, 2007
  (Full free text on journal homepage)
• Ralf Ketter, Yoo-Jin Kim, Simone Storck, Jörg Rahnenführer, Bernd F.M. Romeike, Wolf-Ingo Steudel, Klaus D. Zang, Wolfram Henn
  Hyperdiploidy defines a distinct cytogenetic entity of meningiomas
  Journal of Neuro-Oncology 83(2): 213-221, Epub 2007 Jan 17, 2007
  (Abstract at journal homepage)

 

2006

• Junming Yin, Niko Beerenwinkel, Jörg Rahnenführer, Thomas Lengauer
  Model selection for mixtures of mutagenetic trees
  Statistical Applications in Genetics and Molecular Biology 5, No.1, Article 17, 2006
  (Abstract at journal homepage)
• Andreas Schlicker, Francisco S. Domingues, Jörg Rahnenführer, Thomas Lengauer
  A new Measure for functional Similarity of Gene Products based on Gene Ontology
  BMC Bioinformatics 7: 302, 2006
  (Full free text on BioMed Central)
• Adrian Alexa, Jörg Rahnenführer, Thomas Lengauer
  Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
  Bioinformatics 22(13): 1600-1607, 2006
  (Abstract at journal homepage)

 

2005

• Silke Wemmert, Ralf Ketter, Jörg Rahnenführer, Martin Strowitzki, Wolfgang Feiden, Christian Hartmann, Thomas Lengauer, Florian Stockhammer, Klaus D. Zang, Eckart Meese, Wolf-Ingo Steudel, Andreas von Deimling, Steffi Urbschat
  Patients with high grade gliomas harboring deletions of chromosomes 9p and 10q benefit from temozolomide treatment
  Neoplasia 7(10): 883-893, 2005
  (Abstract at PubMed)
• Niko Beerenwinkel, Tobias Sing, Thomas Lengauer, Jörg Rahnenführer, Kirsten Roomp, Igor Savenkov, Roman Fischer, Daniel Hoffmann, Joachim Selbig, Klaus Korn, Hauke Walter, Thomas Berg, Patrick Braun, Gerd Fätkenheuer, Mark Oette, Jürgen Rockstroh, Bernd Kupfer, Rolf Kaiser, Martin Däumer
  Computational methods for the design of effective therapies against drug resistant HIV strains
  Bioinformatics 21(21): 3943-3950, 2005
  (Abstract at journal homepage)
• Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer
  Learning multiple evolutionary pathways from cross-sectional data
  Journal of Computational Biology 12(6): 584-598, 2005
  (Abstract at journal homepage)
• Jörg Rahnenführer
  Clustering algorithms and other exploratory methods for microarray data analysis
  Methods of Information in Medicine 44(3): 444-448, 2005
  (Abstract at journal homepage)
• Jörg Rahnenführer
  Image analysis for cDNA microarrays
  Methods of Information in Medicine 44(3): 405-407, 2005
  (Abstract at journal homepage)
• Jörg Rahnenführer, Niko Beerenwinkel, Wolfgang A. Schulz, Christian Hartmann, Andreas von Deimling, Bernd Wullich, Thomas Lengauer
  Estimating cancer survival and clinical outcome based on genetic tumor progression scores
  Bioinformatics 21(10): 2438-2446, 2005
  (Abstract at journal homepage)
• Andreas Hahn, Jörg Rahnenführer, Priti Talwar, Thomas Lengauer
  Confirmation of human protein interaction data by human expression data
  BMC Bioinformatics 6: 112, 2005
  (Full free text on BioMed Central)
• Niko Beerenwinkel, Martin Däumer, Tobias Sing, Jörg Rahnenführer, Thomas Lengauer, Joachim Selbig, Daniel Hoffmann, Rolf Kaiser
  Estimating HIV evolutionary pathways and the genetic barrier to drug resistance
  The Journal of Infectious Diseases 191(11): 1953-1960, 2005
  (Abstract at PubMed)
• Niko Beerenwinkel, Jörg Rahnenführer, Rolf Kaiser, Daniel Hoffmann, Joachim Selbig, Thomas Lengauer
  Mtreemix: a software package for learning and using mixture models of mutagenetic trees
  Bioinformatics 21(9): 2106-2107, 2005
  (Abstract at journal homepage)
• Ani V. Das, Jackson James, Jörg Rahnenführer, Wallace B. Thoresona, Sumitra Bhattacharyaa, Xing Zhao, Iqbal Ahmad
  Retinal properties and potential of the adult mammalian ciliary epithelium stem cells
  Vision Research 45(13):1653-1666, 2005
  (Abstract at PubMed)

 

2004

• Francisco S. Domingues, Jörg Rahnenführer, Thomas Lengauer
  Automated clustering of ensembles of alternative models in protein structure databases
  PEDS (Protein Engineering, Design and Selection) 17(6): 537-543, 2004
  (Abstract at journal homepage)
• Jörg Rahnenführer, Francisco S. Domingues, Jochen Maydt, Thomas Lengauer
  Calculating the statistical significance of changes in pathway activity from gene expression data
  Statistical Applications in Genetics and Molecular Biology 3, No.1, Article 16, 2004
  (Abstract at journal homepage)
• Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Jochen Selbig, Thomas Lengauer
  Learning multiple evolutionary pathways from cross-sectional data
  Proc. 8th Ann. Int. Conf. on Res. in Comput. Biol. (RECOMB '04), San Diego, March 27-31, 2004
  (Abstract)
• Jackson James, Ani V. Das, Jörg Rahnenführer, Iqbal Ahmad
  Cellular and molecular characterization of early and late retinal stem cells/progenitors: differential regulation of proliferation and context dependent role of Notch signaling
  Journal of Neurobiology 61(3): 359-376, 2004
  (Abstract at PubMed)
• Ani V. Das, Jackson James, Xing Zhao, Jörg Rahnenführer, Iqbal Ahmad
  Identification of c-Kit receptor as a regulator of adult neural stem cells in the mammalian eye: interactions with Notch signaling
  Developmental Biology 273(1): 87-105, 2004
  (Abstract at PubMed)
• Jörg Rahnenführer, Daniel Bozinov
  Hybrid clustering for microarray image analysis combining intensity and shape features
  BMC Bioinformatics 5: 47, 2004
  (Full free text on BioMed Central)
• Ingolf Sommer, Jörg Rahnenführer, Francisco S. Domingues, Ulrik de Lichtenberg, Thomas Lengauer
  Predicting protein structure classes from function predictions
  Bioinformatics 20(5): 770-776, 2004
  (Abstract at journal homepage)

 

2003

• Jörg Rahnenführer, Andreas Futschik
  Cost-effective screening for differentially expressed genes in microarray experiments based on normal mixtures
  Austrian Journal of Statistics 32, No.3, 225-238, 2003
  (Free pdf-file at journal homepage)
• Jörg Rahnenführer
  On preferences of general two-sided tests with applications to Kolmogorov-Smirnov-type tests
  Statistics and Decisions 21, No.2, 115-136, 2003
  (Abstract at journal homepage)

 

2002

• Jörg Rahnenführer
  Efficient Clustering Methods for Tumor Classification with Microarrays
  Proceedings of 26th Annual Conference of the Gesellschaft für Klassifikation, Mannheim, Germany, July 22-24, 2002
  In: Between Data Science and Applied Data Analysis (Eds: M. Schader, W. Gaul, M. Vichi), Springer, 670-679, 2003.
  (Table of Contents)
• Daniel Bozinov, Jörg Rahnenführer, Cathy Burson, Ofer Spiegelstein
  Automated Grid Alignment for High-Throughput Analysis of Microarray Images
  Proceedings of The 2002 International Conference on Imaging Science, Systems, and Technology (CISST'02), Las Vegas, June 24-27, 2002
  Eds: H.R. Arabnia, Y. Mun, CSREA Press, ISBN 1-892512-95-5
• Arnold Janssen, Jörg Rahnenführer
  A hazard based approach to dependence tests for bivariate censored models
  Mathematical Methods of Statistics 11, No.3, 297-322, 2002
  (Journal homepage)
• Daniel Bozinov, Jörg Rahnenführer
  Unsupervised technique for robust target separation and analysis of DNA microarray spots through adaptive pixel clustering
  Bioinformatics 18(5): 747-756, 2002
  (Abstract at journal homepage)
• Jörg Rahnenführer
  Multivariate permutation tests for the k-sample problem with clustered data
  Computational Statistics 17, No.2, 165-184, 2002
  (Report Series 35, SFB 010, Vienna University of Economics and Business Administration, Statistical Institute)
  (Journal homepage)

 

2001

• Jörg Rahnenführer
  Statistical Inference for Clustering Microarrays
  Proceedings of MSRI Workshop: Nonlinear Estimation and Classification, Berkeley, March 19-29, 2001
  In: Lectures Notes in Statistics 171 (Eds: D.D. Denison, M.H. Hansen, C.C. Holmes, B. Mallick and B. Yu), Springer, 323-332, 2003.
  (Book homepage)